Repository revision
14:20dc70f85ff7

Repository 'str_fm'
hg clone https://toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm

Fetch bases flanking tool metadata
Miscellaneous
the STRs in the reads and output two fastq files in forward-forward orientation
fetchflank
toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm/fetchflank/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm/fetchflank/1.0.0 (this tool)
fetchflank
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 qualitycutoff: 20
lengthofbasetocheckquality: 20
microsat_in_read: samplefq.snoope
Leftflanking: microsatellite_flanking_L.fastq
Rightflanking: microsatellite_flanking_R.fastq
samplefq.snoope
microsatellite_flanking_L.fastq
microsatellite_flanking_R.fastq