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Repository revision

Revision: 12:a3113043abb0

Repository 'str_fm'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm

Correct genotype for STR errors tool metadata

Miscellaneous

Name: Correct genotype for STR errors

Description: that occur during sequencing and library prep

Id: GenotypeSTR

Guid: toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm/GenotypeSTR/2.0.0

Version: 2.0.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm/GenotypeSTR/2.0.0 (this tool)

GenotypeSTR

Requirements (dependencies defined in the <requirements> tag set)

No requirements defined

Functional tests

name

inputs

outputs

required files

Test-1

expectedminorallele: 0.5
microsat_error_profile: PCRinclude.allrate.bymajorallele
microsat_raw: sampleTRprofile_C.txt

microsat_corrected: sampleTRgenotypingcorrection

sampleTRprofile_C.txt
PCRinclude.allrate.bymajorallele
sampleTRgenotypingcorrection