Repository revision
0:42a39792aaae

Repository 'spades_biosyntheticspades'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/spades_biosyntheticspades

biosyntheticSPAdes tool metadata
Miscellaneous
biosynthetic gene cluster assembly
spades_biosyntheticspades
toolshed.g2.bx.psu.edu/repos/iuc/spades_biosyntheticspades/spades_biosyntheticspades/3.15.3+galaxy0
3.15.3+galaxy0
spades.py --version 2>&1 | awk -F 'v' '{print $2}'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/spades_biosyntheticspades/spades_biosyntheticspades/3.15.3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/spades_biosyntheticspades/spades_biosyntheticspades/3.15.3+galaxy0 (this tool)
spades_biosyntheticspades
Requirements (dependencies defined in the <requirements> tag set)
name version type
spades 3.15.3 package
zip 3.0 package
Functional tests
name inputs outputs required files
Test-1 singlePaired|input1: ecoli_1K.fastq.gz
singlePaired|sPaired: paired_interlaced
name: value
name: value
name: value
name: value
ecoli_1K.fastq.gz
value
Test-2 singlePaired|input1: ecoli_1K_1.fastq.gz
singlePaired|input2: ecoli_1K_2.fastq.gz
singlePaired|sPaired: paired
arf|nanopore: ecoli_1K.fastq.gz
kmer_cond|manual: 33
kmer_cond|kmer_sel: manual
phred_offset: 33
mode_sel: --iontorrent
optional_output: ['rs', 'l']
name: value
ecoli_1K_1.fastq.gz
ecoli_1K_2.fastq.gz
ecoli_1K.fastq.gz
value
Test-3 singlePaired|input1: ecoli_1K.fastq.gz
singlePaired|sPaired: paired_interlaced
optional_output: ['rs', 'b']
name: value
name: value
ecoli_1K.fastq.gz
value