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Repository revision

Revision: 1:acb3ed49109e

Repository 'schicexplorer_schiccreatebulkmatrix'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccreatebulkmatrix

scHicCreateBulkMatrix tool metadata

Miscellaneous

Name: scHicCreateBulkMatrix

Description: creates the bulk matrix out of single-cell Hi-C interaction matrices

Id: schicexplorer_schiccreatebulkmatrix

Guid: toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccreatebulkmatrix/schicexplorer_schiccreatebulkmatrix/4.1

Version: 4.1

Version command string: scHicCreateBulkMatrix --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccreatebulkmatrix/schicexplorer_schiccreatebulkmatrix/4.1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccreatebulkmatrix/schicexplorer_schiccreatebulkmatrix/4.0

schicexplorer_schiccreatebulkmatrix

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

schicexplorer

4

package

Additional information about this tool

Command:

scHicCreateBulkMatrix

        --matrix '$matrix_scooler'

        --outFileName bulk_matrix.cool

        --threads \${GALAXY_SLOTS:-4}

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

matrix_scooler: test_matrix.scool

name: value

test_matrix.scool
value