| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_mimarkspackage/mothur_get_mimarkspackage/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_mimarkspackage/mothur_get_mimarkspackage/1.36.1.0 |
| mothur_get_mimarkspackage |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$input.infile' input.infile.dat &&
echo 'get.mimarkspackage(
#if $input.filetype == "group":
group=input.infile.dat,
#elif $input.filetype == "oligos":
oligos=input.infile.dat,
#end if
package=$package,
requiredonly=$requiredonly
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input|infile: amazon.groups input|filetype: group savelog: True |
name: value name: value |
amazon.groups value |
| Test-2 |
input|infile: GQY1XT001.oligos input|filetype: oligos package: human_associated requiredonly: True savelog: True |
name: value name: value |
GQY1XT001.oligos value |