| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_filtnormconf/raceid_filtnormconf/3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_filtnormconf/raceid_filtnormconf/3.0.2.3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_filtnormconf/raceid_filtnormconf/3.0.2.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/raceid_filtnormconf/raceid_filtnormconf/3.0.2.1 |
| raceid_filtnormconf |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| r-raceid | 0.1.1 | package |
| bioconductor-scran | 1.6.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
intable: use.intestinal |
attributes: name attributes: name |
use.intestinal name |
| Test-2 |
filt|minexpr: 1 intable: matrix.tabular filt|minnumber: 3 filt|mintotal: 1050 |
attributes: name attributes: name |
matrix.tabular name |
| Test-3 |
filt|use|knn: 10 filt|minexpr: 5 filt|use|bmode: RaceID filt|mintotal: 3000 filt|minnumber: 5 filt|use|ccor: 0.4 filt|use|def: no intable: use.intestinal |
attributes: name |
use.intestinal name |
| Test-4 |
intable: use.intestinal filt|hist_geq_one: True |
attributes: name |
use.intestinal name |
| Test-5 |
filt|use|knn: 5 filt|minexpr: 3 filt|use|bmode: scran filt|use|ccc|mode: pca filt|use|ccc|pvalue: 0.05 filt|use|ccc|logscale: True filt|use|LBatch_regexes: ^I5,^II5,^III5,^IV5d,^V5d filt|mintotal: 2000 filt|minnumber: 2 filt|use|ccc|quant: 0.05 filt|use|CGenes: Gga3,Ggact,Ggct filt|use|ccor: 0.5 filt|use|ccc|use: yes filt|use|ccc|dimr: True filt|use|FGenes: Zxdc,Zyg11a,Zyg11b,Zyx filt|use|def: no intable: use.intestinal filt|use|ccc|ncomp: 3 |
attributes: name |
use.intestinal name |