Repository revision
8:579f42fea99c

Repository 'qiime_make_otu_heatmap'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_make_otu_heatmap

Plot heatmap of OTU table tool metadata
Miscellaneous
(make_otu_heatmap)
qiime_make_otu_heatmap
toolshed.g2.bx.psu.edu/repos/iuc/qiime_make_otu_heatmap/qiime_make_otu_heatmap/1.9.1.0
1.9.1.0
make_otu_heatmap.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_make_otu_heatmap/qiime_make_otu_heatmap/1.9.1.0 (this tool)
qiime_make_otu_heatmap
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
Functional tests
name inputs outputs required files
Test-1 ad|obs_md_category: taxonomy
ad|select: yes
otu_table_fp: make_otu_heatmap/otu_table.biom
ad|color_scheme: YlGn
ad|dpi: 200
no_log_transform: False
absolute_abundance: False
ad|width: 5
suppress_row_clustering: False
suppress_column_clustering: False
imagetype: pdf
ad|height: 5
attributes: name
make_otu_heatmap/otu_table.biom
name
Test-2 ad|obs_md_category: taxonomy
ad|select: yes
otu_table_fp: make_otu_heatmap/otu_table.biom
ad|color_scheme: YlGn
ad|dpi: 200
no_log_transform: False
absolute_abundance: False
ad|width: 5
suppress_row_clustering: False
suppress_column_clustering: False
imagetype: png
ad|height: 5
attributes: name
make_otu_heatmap/otu_table.biom
name
Test-3 ad|obs_md_category: taxonomy
ad|select: yes
otu_table_fp: make_otu_heatmap/otu_table.biom
ad|color_scheme: YlGn
ad|dpi: 200
no_log_transform: False
absolute_abundance: False
ad|width: 5
suppress_row_clustering: False
suppress_column_clustering: False
imagetype: svg
ad|height: 5
attributes: name
make_otu_heatmap/otu_table.biom
name
Test-4 ad|obs_md_category: taxonomy
ad|select: yes
map_fname: make_otu_heatmap/mapping_file.txt
otu_table_fp: make_otu_heatmap/otu_table.biom
ad|color_scheme: YlGn
ad|dpi: 200
no_log_transform: False
ad|height: 5
ad|width: 5
suppress_row_clustering: False
suppress_column_clustering: False
imagetype: pdf
absolute_abundance: False
attributes: name
make_otu_heatmap/otu_table.biom
make_otu_heatmap/mapping_file.txt
name
Test-5 ad|obs_md_category: taxonomy
ad|select: yes
map_fname: make_otu_heatmap/mapping_file.txt
otu_table_fp: make_otu_heatmap/otu_table.biom
otu_tree: make_otu_heatmap/rep_set.tre
ad|color_scheme: YlGn
ad|dpi: 200
no_log_transform: False
ad|height: 5
ad|width: 5
suppress_row_clustering: False
suppress_column_clustering: False
imagetype: pdf
absolute_abundance: False
attributes: name
make_otu_heatmap/otu_table.biom
make_otu_heatmap/rep_set.tre
make_otu_heatmap/mapping_file.txt
name
Test-6 category: Treatment
ad|obs_md_category: taxonomy
ad|select: yes
map_fname: make_otu_heatmap/mapping_file.txt
otu_table_fp: make_otu_heatmap/otu_table.biom
ad|color_scheme: YlGn
ad|dpi: 200
no_log_transform: False
ad|height: 5
ad|width: 5
suppress_row_clustering: False
suppress_column_clustering: False
imagetype: pdf
absolute_abundance: False
attributes: name
make_otu_heatmap/otu_table.biom
make_otu_heatmap/mapping_file.txt
name