| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_filter/delly_filter/0.9.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_filter/delly_filter/0.8.7+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_filter/delly_filter/0.8.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_filter/delly_filter/0.8.3+galaxy0 |
| delly_filter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| delly | 0.8.7 | package |
| bcftools | 1.10.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: call_1.bcf.gz sv|mode_cond|samples: samples.tsv sv|mode_cond|mode_sel: somatic oo|out: ['vcf', 'bcf'] |
name: value name: value |
call_1.bcf.gz samples.tsv value |
| Test-2 |
input: call_1.bcf.gz generic|altaf: 0.3 generic|minsize: 1 generic|maxsize: 500000001 generic|ratiogeno: 0.76 generic|pass: True sv|mode_cond|samples: samples.tsv sv|mode_cond|coverage: 11 sv|mode_cond|controlcontamination: 0.1 sv|mode_cond|mode_sel: somatic oo|out: ['vcf', 'bcf', 'log'] |
name: value name: value name: value |
call_1.bcf.gz samples.tsv value |
| Test-3 |
input: call_1.bcf.gz sv|mode_cond|mode_sel: germline oo|out: ['vcf', 'bcf'] |
name: value name: value |
call_1.bcf.gz value |
| Test-4 |
input: call_1.bcf.gz generic|altaf: 0.1 generic|minsize: 1 generic|maxsize: 500000001 generic|ratiogeno: 0.76 generic|pass: True sv|mode_cond|gq: 14 sv|mode_cond|rddel: 0.7 sv|mode_cond|rddup: 1.3 sv|mode_cond|mode_sel: germline oo|out: ['vcf', 'bcf', 'log'] |
name: value name: value name: value |
call_1.bcf.gz value |
| Test-5 |
input: call_1.vcf.gz sv|mode_cond|samples: samples.tsv sv|mode_cond|mode_sel: somatic oo|out: ['vcf', 'bcf'] |
name: value name: value |
call_1.vcf.gz samples.tsv value |