| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_filter/bcftools_filter/1.15.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_filter/bcftools_filter/1.10 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_filter/bcftools_filter/1.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_filter/bcftools_filter/1.9 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_filter/bcftools_filter/1.4.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_filter/bcftools_filter/1.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/bcftools_filter/bcftools_filter/1.3.0 |
| bcftools_filter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bcftools | 1.10 | package |
| htslib | 1.10 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: filter.1.vcf sec_filter|SnpGap: 2 sec_filter|IndelGap: 2 sec_filter|mode: x output_type: v |
name: value |
filter.1.vcf value |
| Test-2 |
input_file: filter.2.vcf sec_restrict|exclude: QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10)) sec_filter|soft_filter: Modified sec_filter|select_set_GTs: . output_type: v |
name: value |
filter.2.vcf value |
| Test-3 |
input_file: filter.3.vcf sec_restrict|exclude: INFO/DP=19 output_type: v |
name: value |
filter.3.vcf value |
| Test-4 |
input_file: filter.3.vcf sec_restrict|exclude: INFO/DP=19 sec_filter|soft_filter: XX output_type: v |
name: value |
filter.3.vcf value |
| Test-5 |
input_file: filter.3.vcf sec_restrict|exclude: INFO/DP=19 sec_filter|mode: + sec_filter|soft_filter: XX output_type: v |
name: value |
filter.3.vcf value |
| Test-6 |
input_file: filter.3.vcf sec_restrict|exclude: INFO/DP=19 sec_filter|mode: x sec_filter|soft_filter: XX output_type: v |
name: value |
filter.3.vcf value |
| Test-7 |
input_file: filter.3.vcf sec_restrict|exclude: INFO/DP=19 sec_filter|mode: ['+', 'x'] sec_filter|soft_filter: XX output_type: v |
name: value |
filter.3.vcf value |
| Test-8 |
input_file: filter.3.vcf sec_restrict|exclude: FMT/GT="0/2" output_type: v |
name: value |
filter.3.vcf value |
| Test-9 |
input_file: filter.2.vcf sec_restrict|include: FMT/GT="0/0" && AC[*]=2 output_type: v |
name: value |
filter.2.vcf value |