Repository revision
8:3da72230c066

Repository 'seqtk'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/seqtk

seqtk_trimfq tool metadata
Miscellaneous
seqtk_trimfq
trim FASTQ using the Phred algorithm
seqtk_trimfq
toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.3.1
1.3.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.3.1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.3.0
toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.0-r75-dirty.0
seqtk_trimfq
Requirements (dependencies defined in the <requirements> tag set)
name version type
seqtk 1.3 package
pigz 2.3.4 package
Functional tests
name inputs outputs required files
Test-1 in_file: seqtk_trimfq.fq
mode|q: 0.05
mode|l: 30
mode|mode_select: quality
name: value
seqtk_trimfq.fq
value
Test-2 in_file: seqtk_trimfq.fq
mode|b: 5
mode|e: 5
mode|mode_select: position
name: value
seqtk_trimfq.fq
value
Test-3 in_file: seqtk_trimfq.fq.gz
mode|b: 5
mode|e: 5
mode|mode_select: position
name: value
seqtk_trimfq.fq.gz
value