| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_seq/1.4+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_seq/1.3.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_seq/1.3.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_seq/1.0-r75-dirty.0 |
| seqtk_seq |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| seqtk | 1.4 | package |
| pigz | 2.3.4 | package |
| Additional information about this tool |
seqtk seq -q $q
-X $X
#if $n:
-n '$n'
#end if
-l $l
-Q $Q
-s $s
-f $f
#if $M:
-M '$M'
#end if
-L $L
$c
$r
$A
$C
$N
$x1
$x2
#if $in_file.is_of_type('fastqillumina')
-V
#end if
'$in_file'
#echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in_file: seqtk_seq.fa n: r: True |
name: value |
seqtk_seq.fa value |
| Test-2 |
in_file: seqtk_seq.fa.gz n: r: True |
name: value |
seqtk_seq.fa.gz value |