| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.4+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.3.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.2.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.0-r75-dirty.0 |
| seqtk_comp |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| seqtk | 1.4 | package |
| pigz | 2.3.4 | package |
| gawk | 4.2.1 | package |
| Additional information about this tool |
seqtk comp
#if $in_bed:
-r '$in_bed'
#end if
'$in_file' | awk 'BEGIN{print "#chr\tlength\t#A\t#C\t#G\t#T\t#2\t#3\t#4\t#CpG\t#tv\t#ts\t#CpG-ts"}1'
> '$default'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in_file: seqtk_comp.fa |
name: value |
seqtk_comp.fa value |
| Test-2 |
in_file: seqtk_comp.fa.gz |
name: value |
seqtk_comp.fa.gz value |