| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.4+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.0-r75-dirty.0 |
| seqtk_subseq |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| seqtk | 1.4 | package |
| pigz | 2.3.4 | package |
| Additional information about this tool |
seqtk subseq
$t
-l $l
'$in_file'
#if $source.type == 'bed':
'$in_bed'
#else
'$name_list'
#end if
#if $t == '-t':
| awk 'BEGIN{print "chr\tunknown\tseq"}1'
#end if
#echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in_file: seqtk_subseq.fa source|name_list: seqtk_subseq_list.txt source|type: name t: False |
name: value |
seqtk_subseq.fa seqtk_subseq_list.txt value |
| Test-2 |
in_file: seqtk_subseq.fa.gz source|name_list: seqtk_subseq_list.txt source|type: name t: False |
name: value |
seqtk_subseq.fa.gz seqtk_subseq_list.txt value |