| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.4+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.3.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.3.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_trimfq/1.0-r75-dirty.0 |
| seqtk_trimfq |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| seqtk | 1.4 | package |
| pigz | 2.3.4 | package |
| Additional information about this tool |
seqtk trimfq
#if $mode.mode_select == "quality":
-q $mode.q
-l $mode.l
#else:
-b $mode.b
-e $mode.e
#end if
'$in_file'
#echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in_file: seqtk_trimfq.fq mode|q: 0.05 mode|l: 30 mode|mode_select: quality |
name: value |
seqtk_trimfq.fq value |
| Test-2 |
in_file: seqtk_trimfq.fq mode|b: 5 mode|e: 5 mode|mode_select: position |
name: value |
seqtk_trimfq.fq value |
| Test-3 |
in_file: seqtk_trimfq.fq.gz mode|b: 5 mode|e: 5 mode|mode_select: position |
name: value |
seqtk_trimfq.fq.gz value |