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Create phyloseq object tool metadata

Miscellaneous

Name: Create phyloseq object

Description: from dada2 sequence and taxonomy tables

Id: phyloseq_from_dada2

Guid: toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.50.0+galaxy2

Version: 1.50.0+galaxy2

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.50.0+galaxy3

toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.50.0+galaxy2 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.50.0+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.50.0+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.46.0+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.38.0+galaxy0

phyloseq_from_dada2

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

bioconductor-phyloseq

1.50.0

package

r-optparse

1.7.5

package

r-tidyverse

2.0.0

package

Additional information about this tool

Command:

Rscript '${__tool_directory__}/phyloseq_from_dada2.R' 
--sequence_table '$sequence_table' 
--taxonomy_table '$taxonomy_table' 
#if $sample_table
    --sample_table '$sample_table' 
#end if
--output '$output'

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

sequence_table: sequence_table.dada2_sequencetable
taxonomy_table: taxonomy_table.tabular

name: value

sequence_table.dada2_sequencetable
taxonomy_table.tabular
value

Test-2

sequence_table: sequence_table.dada2_sequencetable
taxonomy_table: taxonomy_table.tabular
sample_table: sample_data.tabular

name: value

sequence_table.dada2_sequencetable
taxonomy_table.tabular
sample_data.tabular
value