| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.50.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.50.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.46.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/phyloseq_from_dada2/phyloseq_from_dada2/1.38.0+galaxy0 |
| phyloseq_from_dada2 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-phyloseq | 1.50.0 | package |
| r-optparse | 1.7.5 | package |
| r-tidyverse | 2.0.0 | package |
| Additional information about this tool |
Rscript '${__tool_directory__}/phyloseq_from_dada2.R'
--sequence_table '$sequence_table'
--taxonomy_table '$taxonomy_table'
#if $sample_table
--sample_table '$sample_table'
#end if
--output '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
sequence_table: sequence_table.dada2_sequencetable taxonomy_table: taxonomy_table.tabular |
name: value |
sequence_table.dada2_sequencetable taxonomy_table.tabular value |
| Test-2 |
sequence_table: sequence_table.dada2_sequencetable taxonomy_table: taxonomy_table.tabular sample_table: sample_data.tabular |
name: value |
sequence_table.dada2_sequencetable taxonomy_table.tabular sample_data.tabular value |