| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_sfffiles/mothur_merge_sfffiles/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_sfffiles/mothur_merge_sfffiles/1.36.1.0 |
| mothur_merge_sfffiles |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
#for $i in $input:
ln -s '$i' input${input.index($i)}.dat &&
#end for
echo 'merge.sfffiles(
sff=#for $i in $input#input${input.index($i)}.dat-#end for#,
output=$output
)'
| sed 's/ //g' ## mothur trips over whitespace
| sed 's/-,/,/g'
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: ['Fasting_Example1.sff', 'Fasting_Example2.sff'] savelog: True |
name: value name: value |
Fasting_Example1.sff Fasting_Example2.sff value |