Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_sfffiles/mothur_merge_sfffiles/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_sfffiles/mothur_merge_sfffiles/1.36.1.0 |
mothur_merge_sfffiles |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets #for $i in $input: ln -s '$i' input${input.index($i)}.dat && #end for echo 'merge.sfffiles( sff=#for $i in $input#input${input.index($i)}.dat-#end for#, output=$output )' | sed 's/ //g' ## mothur trips over whitespace | sed 's/-,/,/g' | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input: ['Fasting_Example1.sff', 'Fasting_Example2.sff'] savelog: True |
name: value name: value |
Fasting_Example1.sff Fasting_Example2.sff value |