| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.44 |
| toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.43 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.42 |
| toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.41 |
| toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.40 |
| toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.30 |
| toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.20 |
| toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.10 |
| toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.9 |
| idr_download_by_ids |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| omero-py | 5.10.1 | package |
| pylibtiff | 0.4.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
omero_instance_type|omero_instance: idr image_ids|id_spec: ids.txt image_ids|source: dataset channel: PCNT frame: 0 clip_image|x_coord: 3 clip_image|y_coord: 3 clip_image|width: 5 clip_image|height: 5 clip_image|select: --rectangle download_tar: False |
ids.txt |
|
| Test-2 |
omero_instance_type|omero_instance: idr image_ids|id_spec: 1884807 image_ids|source: link channel: PCNT frame: 2 clip_image|x_coord: 3 clip_image|y_coord: 3 clip_image|width: 5 clip_image|height: 5 clip_image|select: --rectangle download_tar: False |
||
| Test-3 |
omero_instance_type|omero_instance: idr image_ids|id_spec: 1884807 image_ids|source: link channel: PCNT frame: 2 clip_image|x_coord: 5 clip_image|y_coord: 5 clip_image|width: 5 clip_image|height: 5 clip_image|select: --center download_tar: False |
||
| Test-4 |
omero_instance_type|omero_instance: idr image_ids|id_spec: https://idr.openmicroscopy.org/webclient/?show=image-9036708|image-9036710|image-9036711 image_ids|source: link channel: Spo20(51-91) z_section: 4 frame: 20 clip_image|select: download_tar: False |
name: value |
value |
| Test-5 |
omero_instance_type|omero_instance: idr image_ids|id_spec: https://idr.openmicroscopy.org/webclient/?show=image-9036708999|image-9036710|image-9036711 image_ids|source: link channel: Spo20(51-91) z_section: 4 frame: 20 clip_image|select: download_tar: False |
||
| Test-6 |
omero_instance_type|omero_instance: idr image_ids|id_spec: https://idr.openmicroscopy.org/webclient/?show=image-9036708999|image-9036710|image-9036711 image_ids|source: link channel: Spo20(51-91) z_section: 4 frame: 20 clip_image|select: skip_failed: True download_tar: False |
name: value |
value |
| Test-7 |
omero_instance_type|omero_instance: idr image_ids|id_spec: ids_tar.txt image_ids|source: dataset channel: Hoechst frame: 0 clip_image|x_coord: 0 clip_image|y_coord: 0 clip_image|width: 671 clip_image|height: 511 clip_image|select: --rectangle |
name: value |
ids_tar.txt value |
| Test-8 |
omero_instance_type|omero_host: idr.openmicroscopy.org omero_instance_type|omero_secured: True omero_instance_type|galaxy_test_param: true omero_instance_type|omero_instance: priv image_ids|id_spec: ids.txt image_ids|source: dataset channel: PCNT frame: 0 clip_image|x_coord: 3 clip_image|y_coord: 3 clip_image|width: 5 clip_image|height: 5 clip_image|select: --rectangle download_tar: False |
ids.txt |
|
| Test-9 |
omero_instance_type|omero_host: idr.openmicroscopy.org omero_instance_type|omero_secured: True omero_instance_type|omero_instance: priv image_ids|id_spec: ids.txt image_ids|source: dataset channel: PCNT frame: 0 clip_image|x_coord: 3 clip_image|y_coord: 3 clip_image|width: 5 clip_image|height: 5 clip_image|select: --rectangle download_tar: False |
ids.txt |
|
| Test-10 |
omero_instance_type|omero_instance: idr image_ids|id_dataset_omero: 9059 image_ids|source: omeroDatasetID download_tar: False |