Repository revision
0:57aa9597cd31

Repository 'idr_download_by_ids'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids

IDR Download tool metadata
Miscellaneous
IDR Download
- download images from the Image Data Resource using image IDs
idr_download_by_ids
toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.9
0.9
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.10
toolshed.g2.bx.psu.edu/repos/iuc/idr_download_by_ids/idr_download_by_ids/0.9 (this tool)
idr_download_by_ids
Requirements (dependencies defined in the <requirements> tag set)
name version type
python-omero 5.6.0 package
matplotlib 3.1.3 package
Functional tests
name inputs outputs required files
Test-1 clip_image|width: 5
clip_image|select: --rectangle
frame: 2
clip_image|height: 5
image_ids|id_spec: ids.txt
clip_image|y_coord: 3
image_ids|source: dataset
clip_image|x_coord: 3
channel: 615.0
ids.txt
Test-2 clip_image|width: 5
clip_image|select: --rectangle
frame: 2
clip_image|height: 5
image_ids|id_spec: 1884807
clip_image|y_coord: 3
image_ids|source: link
clip_image|x_coord: 3
channel: 615.0
Test-3 clip_image|width: 5
clip_image|select: --center
frame: 2
clip_image|height: 5
image_ids|id_spec: 1884807
clip_image|y_coord: 5
image_ids|source: link
clip_image|x_coord: 5
channel: 615.0
Test-4 clip_image|select:
frame: 20
z_section: 4
image_ids|id_spec: https://idr.openmicroscopy.org/webclient/?show=image-9036708|image-9036710|image-9036711
image_ids|source: link
channel: Spo20(51-91)
attributes: name
name
Test-5 clip_image|select:
frame: 20
z_section: 4
image_ids|id_spec: https://idr.openmicroscopy.org/webclient/?show=image-9036708999|image-9036710|image-9036711
image_ids|source: link
channel: Spo20(51-91)
Test-6 skip_failed: True
clip_image|select:
frame: 20
z_section: 4
image_ids|id_spec: https://idr.openmicroscopy.org/webclient/?show=image-9036708999|image-9036710|image-9036711
image_ids|source: link
channel: Spo20(51-91)
attributes: name
name