Repository revision
9:6fa08f46db8c

Repository 'trinity_define_clusters_by_cutting_tree'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/trinity_define_clusters_by_cutting_tree

Partition genes into expression clusters tool metadata
Miscellaneous
Partition genes into expression clusters
after differential expression analysis using a Trinity assembly
trinity_define_clusters_by_cutting_tree
toolshed.g2.bx.psu.edu/repos/iuc/trinity_define_clusters_by_cutting_tree/trinity_define_clusters_by_cutting_tree/2.8.4+galaxy1
2.8.4+galaxy1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/trinity_define_clusters_by_cutting_tree/trinity_define_clusters_by_cutting_tree/2.8.5
toolshed.g2.bx.psu.edu/repos/iuc/trinity_define_clusters_by_cutting_tree/trinity_define_clusters_by_cutting_tree/2.8.4+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/trinity_define_clusters_by_cutting_tree/trinity_define_clusters_by_cutting_tree/2.8.4
toolshed.g2.bx.psu.edu/repos/iuc/trinity_define_clusters_by_cutting_tree/trinity_define_clusters_by_cutting_tree/2.8.3
toolshed.g2.bx.psu.edu/repos/iuc/trinity_define_clusters_by_cutting_tree/trinity_define_clusters_by_cutting_tree/2.6.6
toolshed.g2.bx.psu.edu/repos/iuc/trinity_define_clusters_by_cutting_tree/trinity_define_clusters_by_cutting_tree/2.4.0.0
toolshed.g2.bx.psu.edu/repos/iuc/trinity_define_clusters_by_cutting_tree/trinity_define_clusters_by_cutting_tree/2.2.0.0
trinity_define_clusters_by_cutting_tree
Requirements (dependencies defined in the <requirements> tag set)
name version type
trinity 2.8.4 package
bioconductor-biobase 2.38.0 package
r-cluster 2.0.6 package
r-fastcluster 1.1.24 package
Functional tests
name inputs outputs required files
Test-1 method|method_selector: --Ptree
method|ptree: 60
rdata: count/analyze_diff_expr/results.matrix.RData
 attributes: name
 count/analyze_diff_expr/results.matrix.RData
name