| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.46.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.42.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.40.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.40.0 |
| stacks_denovomap |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| stacks | 1.46 | package |
| velvet | 1.2.10 | package |
| stacks_summary | 1.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
options_usage|parent_sequences: demultiplexed/PopA_01.1.fq options_usage|rad_analysis_type: genetic |
name: value name: value name: value name: value name: value name: value name: value name: value name: value |
demultiplexed/PopA_01.1.fq value |
| Test-2 |
options_usage|parent_sequences: demultiplexed/PopA_01.1.fq options_usage|progeny_sequences: demultiplexed/PopA_02.1.fq options_usage|rad_analysis_type: genetic |
name: value name: value name: value name: value name: value name: value name: value name: value name: value |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq value |
| Test-3 |
options_usage|individual_sample: ['demultiplexed/PopA_01.1.fq', 'demultiplexed/PopA_02.1.fq', 'demultiplexed/PopA_03.1.fq', 'demultiplexed/PopA_04.1.fq', 'demultiplexed/PopB_01.1.fq', 'demultiplexed/PopB_02.1.fq', 'demultiplexed/PopB_03.1.fq', 'demultiplexed/PopB_04.1.fq'] options_usage|popmap: denovo_map/popmap.tsv options_usage|rad_analysis_type: population |
name: value name: value name: value name: value name: value name: value name: value name: value name: value name: value |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq demultiplexed/PopA_03.1.fq demultiplexed/PopA_04.1.fq demultiplexed/PopB_01.1.fq demultiplexed/PopB_02.1.fq demultiplexed/PopB_03.1.fq demultiplexed/PopB_04.1.fq denovo_map/popmap.tsv value |
| Test-4 |
options_usage|parent_sequences: demultiplexed/PopA_01.1.fq.gzip options_usage|rad_analysis_type: genetic |
name: value name: value name: value name: value name: value name: value name: value name: value name: value |
demultiplexed/PopA_01.1.fq.gzip value |