Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.40.1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.40.0 (this tool) |
stacks_denovomap |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
stacks | 1.40 | package |
velvet | 1.2.10 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
options_usage|rad_analysis_type: genetic options_usage|parent_sequences: demultiplexed/PopA_01.1.fq options_usage|progeny_sequences: demultiplexed/PopA_02.1.fq |
output_log: None catalogtags: None catalogsnps: None catalogalleles: None out_generic_haplo: None out_sql_markers: None out_joinmap: None out_sql_genotypes: None |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq |
Test-2 |
options_usage|individual_sample: ['demultiplexed/PopA_01.1.fq', 'demultiplexed/PopA_02.1.fq', 'demultiplexed/PopA_03.1.fq', 'demultiplexed/PopA_04.1.fq', 'demultiplexed/PopB_01.1.fq', 'demultiplexed/PopB_02.1.fq', 'demultiplexed/PopB_03.1.fq', 'demultiplexed/PopB_04.1.fq'] options_usage|rad_analysis_type: population options_usage|popmap: denovo_map/popmap.tsv |
output_log: None catalogtags: None catalogsnps: None catalogalleles: None out_haplotypes: None out_hapstats: None out_populations_log: None out_sumstats_sum: None out_sumstats: None |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq demultiplexed/PopA_03.1.fq demultiplexed/PopA_04.1.fq demultiplexed/PopB_01.1.fq demultiplexed/PopB_02.1.fq demultiplexed/PopB_03.1.fq demultiplexed/PopB_04.1.fq denovo_map/popmap.tsv |