Repository revision
0:1c58de56d587

Repository 'ncbi_acc_download'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/ncbi_acc_download

NCBI Accession Download tool metadata
Miscellaneous
Download sequences from GenBank/RefSeq by accession through the NCBI ENTREZ API
ncbi_acc_download
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_acc_download/ncbi_acc_download/0.2.5+galaxy0
0.2.5+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_acc_download/ncbi_acc_download/0.2.7+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/ncbi_acc_download/ncbi_acc_download/0.2.5+galaxy0 (this tool)
ncbi_acc_download
Requirements (dependencies defined in the <requirements> tag set)
name version type
ncbi-acc-download 0.2.5 package
Functional tests
name inputs outputs required files
Test-1 query_source|select: accession_file
query_source|accession_file: accessions_1.tsv
molecule|format: fasta
molecule|select: nucleotide
accessions_1.tsv
Test-2 query_source|select: accession_file
query_source|accession_file: accessions_1.tsv
molecule|format: genbank
molecule|select: nucleotide
accessions_1.tsv
Test-3 query_source|select: accession_file
query_source|accession_file: accessions_1.tsv
molecule|format: gff3
molecule|select: nucleotide
accessions_1.tsv
Test-4 query_source|select: accession_file
query_source|accession_file: accessions_1.tsv
molecule|format: featuretable
molecule|select: nucleotide
accessions_1.tsv
Test-5 query_source|select: accession_list
query_source|accession_list: CP011064,CP021680
molecule|format: fasta
molecule|select: nucleotide
Test-6 query_source|select: accession_list
query_source|accession_list: CP011064,CP0XXXXX,CP021680
molecule|format: fasta
ignore_failed: 1
molecule|select: nucleotide
attributes: name
name
Test-7 query_source|select: accession_list
query_source|accession_list: CP0XXXXX
molecule|format: fasta
ignore_failed: 1
molecule|select: nucleotide
attributes: name
name
Test-8 query_source|select: accession_list
query_source|accession_list: CP011064,CP0XXXXX,CP021680
molecule|format: fasta
ignore_failed: 0
molecule|select: nucleotide
Test-9 query_source|select: accession_list
query_source|accession_list: CP011064 CP021680
molecule|format: fasta
molecule|select: nucleotide
Test-10 query_source|select: accession_list
query_source|accession_list: NP_003192
molecule|format: fasta
molecule|select: protein