Repository revision
6:3af626081467

Repository 'sklearn_pca'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_pca

Principal component analysis tool metadata
Miscellaneous
Principal component analysis
with scikit-learn
sklearn_pca
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_pca/sklearn_pca/1.0.8.4+galaxy0
1.0.8.4+galaxy0
echo "1.0.8.4"
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_pca/sklearn_pca/1.0.10.0
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_pca/sklearn_pca/1.0.8.4+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_pca/sklearn_pca/1.0.8.3+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_pca/sklearn_pca/1.0.8.2+galaxy0
sklearn_pca
Requirements (dependencies defined in the <requirements> tag set)
name version type
Galaxy-ML 0.8.3 package
Functional tests
name inputs outputs required files
Test-1 infile: pca_input.dat
column_selector_options|col1: ['1', '2', '4', '6', '8', '5']
column_selector_options|selected_column_selector_option: by_index_number
select_pca_type|number: 5
select_pca_type|select_solver_type|tolerance: 0.4
select_pca_type|select_solver_type|svd_solver_opts: arpack
select_pca_type|select_pca_opts: classical
 name: value
 pca_input.dat
value
Test-2 infile: pca_input_with_headers.dat
header: True
column_selector_options|col1: col_1,col_2,col_4,col_6,col_8,col_5
column_selector_options|selected_column_selector_option: by_header_name
select_pca_type|number: 5
select_pca_type|select_solver_type|tolerance: 0.4
select_pca_type|select_solver_type|svd_solver_opts: arpack
select_pca_type|select_pca_opts: classical
 name: value
 pca_input_with_headers.dat
value
Test-3 infile: pca_input.dat
column_selector_options|col1: ['8', '5']
column_selector_options|selected_column_selector_option: all_but_by_index_number
select_pca_type|number: 7
select_pca_type|batch_size: 64
select_pca_type|select_pca_opts: incremental
 name: value
 pca_input.dat
value
Test-4 infile: pca_input_with_headers.dat
header: True
column_selector_options|col1: col_8,col_5
column_selector_options|selected_column_selector_option: all_but_by_header_name
select_pca_type|number: 7
select_pca_type|batch_size: 64
select_pca_type|select_pca_opts: incremental
 name: value
 pca_input_with_headers.dat
value
Test-5 infile: pca_input.dat
column_selector_options|selected_column_selector_option: all_columns
select_pca_type|number: 8
select_pca_type|select_kernel_opts|kernel_opts: linear
select_pca_type|select_solver_type|tolerance: 4.3
select_pca_type|select_solver_type|max_iter: 8
select_pca_type|select_solver_type|eigen_solver_opts: arpack
select_pca_type|select_pca_opts: kernel
 name: value
 pca_input.dat
value
Test-6 infile: pca_input.dat
column_selector_options|selected_column_selector_option: all_columns
select_pca_type|number: 8
select_pca_type|select_kernel_opts|gamma: 0.3
select_pca_type|select_kernel_opts|degree: 4
select_pca_type|select_kernel_opts|coef0: 1.6
select_pca_type|select_kernel_opts|kernel_opts: poly
select_pca_type|select_solver_type|eigen_solver_opts: auto
select_pca_type|select_pca_opts: kernel
 name: value
 pca_input.dat
value