| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.04.22+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.2.2 |
| lastz_wrapper_2 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| lastz | 1.04.22 | package |
| samtools | 1.14 | package |
| r-base | 3.6.3 | package |
| bzip2 | 1.0.8 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
source|target_2bit: phiX174 source|ref_source: cached query: phiX_split.fasta where_to_look|strand: --strand=both output_format|out|format: general_def |
name: value |
phiX_split.fasta value |
| Test-2 |
source|target: phiX_split.fasta source|ref_source: history query: phiX.fasta where_to_look|strand: --strand=both output_format|out|format: general_def |
name: value |
phiX_split.fasta phiX.fasta value |
| Test-3 |
source|target: phiX_split.fasta source|ref_source: history query: phiX.fasta where_to_look|strand: --strand=both scoring|score_file: score_file.txt output_format|out|format: general_def |
name: value |
phiX_split.fasta phiX.fasta score_file.txt value |
| Test-4 |
source|target: chrM_mouse.fa.gz source|ref_source: history query: chrM_human.fa.gz where_to_look|strand: --strand=both output_format|out|format: blastn |
name: value |
chrM_mouse.fa.gz chrM_human.fa.gz value |
| Test-5 |
source|target: chrM_human.fa.gz source|ref_source: history query: chrM_mouse.fq.bz2 where_to_look|strand: --strand=both output_format|out|format: blastn |
name: value |
chrM_human.fa.gz chrM_mouse.fq.bz2 value |
| Test-6 |
source|target: chrM_human.fa.gz source|ref_source: history query: chrM_mouse.fq.gz where_to_look|strand: --strand=both output_format|out|format: blastn |
name: value |
chrM_human.fa.gz chrM_mouse.fq.gz value |
| Test-7 |
source|target: chrM_human.fa.gz source|ref_source: history query: chrM_mouse.fq lastz_32: True where_to_look|strand: --strand=both output_format|out|format: blastn |
name: value |
chrM_human.fa.gz chrM_mouse.fq value |
| Test-8 |
source|target_2bit: phiX174 source|ref_source: cached query: phiX_split.fasta where_to_look|strand: --strand=both output_format|out|format: differences |
name: value |
phiX_split.fasta value |