| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.3.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/lastz/lastz_wrapper_2/1.2.2 |
| lastz_wrapper_2 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| lastz | 1.0.4 | package |
| samtools | 1.7 | package |
| r-base | 3.4.2 | package |
| bzip2 | 1.0.6 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
source|target_2bit: phiX174 query: phiX_split.fasta output_format|out|format: general_def source|ref_source: cached where_to_look|strand: --strand=both |
attributes: name |
phiX_split.fasta name |
| Test-2 |
query: phiX.fasta source|target: phiX_split.fasta output_format|out|format: general_def where_to_look|strand: --strand=both source|ref_source: history |
attributes: name |
phiX_split.fasta phiX.fasta name |
| Test-3 |
scoring|score_file: score_file.txt output_format|out|format: general_def source|ref_source: history source|target: phiX_split.fasta query: phiX.fasta where_to_look|strand: --strand=both |
attributes: name |
phiX_split.fasta phiX.fasta score_file.txt name |
| Test-4 |
query: chrM_human.fa.gz source|target: chrM_mouse.fa.gz output_format|out|format: blastn where_to_look|strand: --strand=both source|ref_source: history |
attributes: name |
chrM_mouse.fa.gz chrM_human.fa.gz name |
| Test-5 |
query: chrM_mouse.fq.bz2 source|target: chrM_human.fa.gz output_format|out|format: blastn where_to_look|strand: --strand=both source|ref_source: history |
attributes: name |
chrM_human.fa.gz chrM_mouse.fq.bz2 name |
| Test-6 |
query: chrM_mouse.fq.gz source|target: chrM_human.fa.gz output_format|out|format: blastn where_to_look|strand: --strand=both source|ref_source: history |
attributes: name |
chrM_human.fa.gz chrM_mouse.fq.gz name |
| Test-7 |
query: chrM_mouse.fq source|target: chrM_human.fa.gz output_format|out|format: blastn where_to_look|strand: --strand=both source|ref_source: history |
attributes: name |
chrM_human.fa.gz chrM_mouse.fq name |