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Repository revision

Revision: 10:d247213cebfc

Repository 'mothur_deunique_tree'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_deunique_tree

Deunique.tree tool metadata

Miscellaneous

Name: Deunique.tree

Description: Reinsert the redundant sequence identiers back into a unique tree.

Id: mothur_deunique_tree

Guid: toolshed.g2.bx.psu.edu/repos/iuc/mothur_deunique_tree/mothur_deunique_tree/1.39.5.0

Version: 1.39.5.0

Version command string: mothur "#help()" | sed '7q;d' | cut -d" " -f2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_deunique_tree/mothur_deunique_tree/1.39.5.0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_deunique_tree/mothur_deunique_tree/1.36.1.0

mothur_deunique_tree

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

mothur

1.39.5

package

Additional information about this tool

Command:

set -o pipefail; export TERM=vt100; 

## create symlinks to input datasets
ln -s '$tree' tree.dat &&
ln -s '$names' names.dat &&

echo 'deunique.tree(
    tree=tree.dat,
    name=names.dat
)'
| sed 's/ //g'  ## mothur trips over whitespace
| mothur
| tee mothur.out.log

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

tree: treetest.tre
names: treetest.names
savelog: True

name: value
name: value

treetest.tre
treetest.names
value