Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants/nanopolish_variants/0.11.1 |
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants/nanopolish_variants/0.1.0 (this tool) |
nanopolish_variants |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
nanopolish | 0.11.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_merged: reads.fasta input_reads_raw: fast5_files.tar.gz reference_source|reference_source_selector: history b: reads.sorted.bam w: tig00000001:200000-202000 reference_source|ref_file: draft_single_seq.fa |
attributes: name attributes: name |
reads.fasta fast5_files.tar.gz reads.sorted.bam draft_single_seq.fa name |
Test-2 |
input_merged: reads.fasta input_reads_raw: fast5_files.tar.bz2 reference_source|reference_source_selector: history b: reads.sorted.bam w: tig00000001:200000-202000 reference_source|ref_file: draft_single_seq.fa |
attributes: name attributes: name |
reads.fasta fast5_files.tar.bz2 reads.sorted.bam draft_single_seq.fa name |
Test-3 |
input_merged: reads.fasta input_reads_raw: fast5_files.tar reference_source|reference_source_selector: history b: reads.sorted.bam w: tig00000001:200000-202000 reference_source|ref_file: draft_single_seq.fa |
attributes: name attributes: name |
reads.fasta fast5_files.tar reads.sorted.bam draft_single_seq.fa name |
Test-4 |
min_flanking_sequence: 10 input_merged: reads.fasta faster: True input_reads_raw: fast5_files.tar.gz reference_source|reference_source_selector: history consensus: False snps: True b: reads.sorted.bam w: tig00000001:198000-202000 reference_source|ref_file: draft_single_seq.fa ploidy: 2 all_bases: True |
attributes: name attributes: name |
reads.fasta fast5_files.tar.gz reads.sorted.bam draft_single_seq.fa name |