| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/rnateam/graphprot_predict_profile/graphprot_predict_profile/1.1.7+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/rnateam/graphprot_predict_profile/graphprot_predict_profile/1.1.7+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/rnateam/graphprot_predict_profile/graphprot_predict_profile/1.1.7 |
| graphprot_predict_profile |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| graphprot | 1.1.7 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
action_type|pos_fasta_file: test_positives.train.fa action_type|neg_fasta_file: test_negatives.train.fa action_type|hpo_options|hpo_mode_type|pos_parop_fasta: test_positives.parop.fa action_type|hpo_options|hpo_mode_type|neg_parop_fasta: test_negatives.parop.fa action_type|hpo_options|hpo_mode_type|hpo_mode_type_selector: supply action_type|training_options|disable_cv: True action_type|training_options|disable_motifs: False action_type|training_options|min_train: 500 action_type|action_type_selector: train |
name: value name: value name: value |
test_positives.train.fa test_negatives.train.fa test_positives.parop.fa test_negatives.parop.fa value |
| Test-2 |
action_type|input_fasta_file: test_predict.fa action_type|model_file: test.model action_type|params_file: test.params action_type|genomic_sites_bed_file: test_predict.bed action_type|prediction_options|conf_out: True action_type|action_type_selector: predict |
name: value name: value name: value name: value name: value |
test_predict.fa test.model test.params test_predict.bed value |
| Test-3 |
action_type|input_fasta_file: test_predict.fa action_type|model_file: test.model action_type|params_file: test.params action_type|prediction_options|ws_pred_out: True action_type|prediction_options|conf_out: True action_type|action_type_selector: predict |
name: value name: value |
test_predict.fa test.model test.params value |