Repository revision
5:e917a2424690

Repository 'cp_cellprofiler'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/cp_cellprofiler

CellProfiler tool metadata
Miscellaneous
CellProfiler
run a CellProfiler pipeline
cp_cellprofiler
toolshed.g2.bx.psu.edu/repos/bgruening/cp_cellprofiler/cp_cellprofiler/3.1.9
3.1.9
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/cp_cellprofiler/cp_cellprofiler/3.1.9+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/cp_cellprofiler/cp_cellprofiler/3.1.9 (this tool)
cp_cellprofiler
Requirements (dependencies defined in the <requirements> tag set)
name version type
cellprofiler 3.1.9 package
Functional tests
name inputs outputs required files
Test-1 pipeline: ExampleHuman.cppipe
con_input_type|input_images: ['images/AS_09125_050116030001_D03f00d0.tif', 'images/AS_09125_050116030001_D03f00d1.tif', 'images/AS_09125_050116030001_D03f00d2.tif']
con_input_type|input_type: no
detailed_output: False
ExampleHuman.cppipe
images/AS_09125_050116030001_D03f00d0.tif
images/AS_09125_050116030001_D03f00d1.tif
images/AS_09125_050116030001_D03f00d2.tif
Test-2 pipeline: ExampleHuman.cppipe
con_input_type|input_images: ['images/AS_09125_050116030001_D03f00d0.tif', 'images/AS_09125_050116030001_D03f00d1.tif', 'images/AS_09125_050116030001_D03f00d2.tif']
con_input_type|input_type: no
detailed_output: True
name: value
ExampleHuman.cppipe
images/AS_09125_050116030001_D03f00d0.tif
images/AS_09125_050116030001_D03f00d1.tif
images/AS_09125_050116030001_D03f00d2.tif
value
Test-3 pipeline: ExampleHuman.cppipe
con_input_type|input_images: images.tar
con_input_type|input_type: yes
detailed_output: False
ExampleHuman.cppipe
images.tar
Test-4 pipeline: ExampleHuman.cppipe
con_input_type|input_images: images.tar
con_input_type|input_type: yes
detailed_output: True
name: value
ExampleHuman.cppipe
images.tar
value