Repository revision
26:2889433c7ae1

Repository 'ncbi_blast_plus'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus

BLAST XML to tabular tool metadata
Miscellaneous
Convert BLAST XML output to tabular
blastxml_to_tabular
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.3.3
0.3.3
python $__tool_directory__/blastxml_to_tabular.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.7.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.3.3 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.3.1
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.3.0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.2.01
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.2.00
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.1.08
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.1.07
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/@WRAPPER_VERSION@
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.1.05
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.1.01
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.1.00
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.0.22
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.0.11
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.0.10
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.0.8
blastxml_to_tabular
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 output|out_format: std
blastxml_file: blastp_four_human_vs_rhodopsin.xml
attributes: name
blastp_four_human_vs_rhodopsin.xml
name
Test-2 output|out_format: ext
blastxml_file: blastp_four_human_vs_rhodopsin.xml
attributes: name
blastp_four_human_vs_rhodopsin.xml
name
Test-3 output|out_format: std
blastxml_file: blastp_sample.xml
attributes: name
blastp_sample.xml
name
Test-4 output|out_format: std
blastxml_file: blastx_rhodopsin_vs_four_human.xml
attributes: name
blastx_rhodopsin_vs_four_human.xml
name
Test-5 output|out_format: ext
blastxml_file: blastx_rhodopsin_vs_four_human.xml
attributes: name
blastx_rhodopsin_vs_four_human.xml
name
Test-6 output|out_format: std
blastxml_file: blastx_sample.xml
attributes: name
blastx_sample.xml
name
Test-7 output|out_format: std
blastxml_file: blastp_human_vs_pdb_seg_no.xml
attributes: name
blastp_human_vs_pdb_seg_no.xml
name
Test-8 output|out_format: ext
blastxml_file: blastp_human_vs_pdb_seg_no.xml
attributes: name
blastp_human_vs_pdb_seg_no.xml
name
Test-9 output|out_format: std
blastxml_file: blastn_arabidopsis.xml
attributes: name
blastn_arabidopsis.xml
name
Test-10 output|out_format: ext
blastxml_file: blastn_arabidopsis.xml
attributes: name
blastn_arabidopsis.xml
name
Test-11 output|out_format: std
blastxml_file: blastn_rhodopsin_vs_three_human.xml
attributes: name
blastn_rhodopsin_vs_three_human.xml
name
Test-12 blastxml_file: blastn_rhodopsin_vs_three_human.xml
output|std_cols: ['qseqid', 'sseqid', 'pident']
output|out_format: cols
output|ext_cols: ['qlen', 'slen']
attributes: name
blastn_rhodopsin_vs_three_human.xml
name