Repository revision
29:5edc472ec434

Repository 'ncbi_blast_plus'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus

NCBI BLAST+ blastn tool metadata
Miscellaneous
Search nucleotide database with nucleotide query sequence(s)
ncbi_blastn_wrapper
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.10.1+galaxy0
2.10.1+galaxy0
blastn -version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.10.1+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.0.11
ncbi_blastn_wrapper
Requirements (dependencies defined in the <requirements> tag set)
name version type
blast 2.10.1 package
Functional tests
name inputs outputs required files
Test-1 query: rhodopsin_nucs.fasta
db_opts|database:
db_opts|subject: three_human_mRNA.fasta
db_opts|db_opts_selector: file
evalue_cutoff: 1e-40
output|out_format: 5
adv_opts|adv_opts_selector: basic
name: value
rhodopsin_nucs.fasta
three_human_mRNA.fasta
value
Test-2 query: rhodopsin_nucs.fasta
db_opts|database:
db_opts|subject: three_human_mRNA.fasta
db_opts|db_opts_selector: file
evalue_cutoff: 1e-40
output|out_format: 6
adv_opts|adv_opts_selector: basic
name: value
rhodopsin_nucs.fasta
three_human_mRNA.fasta
value
Test-3 query: rhodopsin_nucs.fasta
db_opts|database:
db_opts|subject: three_human_mRNA.fasta.gz
db_opts|db_opts_selector: file
evalue_cutoff: 1e-40
output|out_format: 6
adv_opts|adv_opts_selector: basic
name: value
rhodopsin_nucs.fasta
three_human_mRNA.fasta.gz
value
Test-4 query: rhodopsin_nucs.fasta
db_opts|database:
db_opts|subject: three_human_mRNA.fasta
db_opts|db_opts_selector: file
evalue_cutoff: 1e-40
output|std_cols: ['qseqid', 'sseqid', 'pident']
output|ext_cols: ['qlen', 'slen']
output|out_format: cols
adv_opts|adv_opts_selector: basic
name: value
rhodopsin_nucs.fasta
three_human_mRNA.fasta
value
Test-5 query: chimera.fasta
db_opts|database: three_human_mRNA
db_opts|db_opts_selector: db
output|out_format: 6
adv_opts|max_hits: 1
adv_opts|adv_opts_selector: advanced
name: value
chimera.fasta
value
Test-6 query: chimera.fasta
db_opts|database: three_human_mRNA
db_opts|db_opts_selector: db
output|out_format: 0
adv_opts|max_hits: 1
adv_opts|adv_opts_selector: advanced
name: value
chimera.fasta
value
Test-7 query: chimera.fasta
db_opts|database: three_human_mRNA
db_opts|db_opts_selector: db
output|out_format: 6
name: value
chimera.fasta
value
Test-8 query: chimera.fasta
db_opts|database: rhodopsin_nucs
db_opts|db_opts_selector: db
output|out_format: 6
name: value
chimera.fasta
value
Test-9 query: chimera.fasta
db_opts|database: rhodopsin_nucs
db_opts|db_opts_selector: db
output|out_format: 6
adv_opts|max_hsps: 1
adv_opts|adv_opts_selector: advanced
name: value
chimera.fasta
value
Test-10 query: chimera.fasta
db_opts|database: ['three_human_mRNA', 'rhodopsin_nucs']
db_opts|db_opts_selector: db
output|out_format: 6
name: value
chimera.fasta
value