| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/2.10.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.0.11 |
| ncbi_blastx_wrapper |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| blast | 2.10.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
query: rhodopsin_nucs.fasta db_opts|database: db_opts|subject: four_human_proteins.fasta db_opts|db_opts_selector: file evalue_cutoff: 1e-10 output|out_format: 5 adv_opts|adv_opts_selector: basic |
name: value |
rhodopsin_nucs.fasta four_human_proteins.fasta value |
| Test-2 |
query: rhodopsin_nucs.fasta db_opts|database: db_opts|subject: four_human_proteins.fasta db_opts|db_opts_selector: file evalue_cutoff: 1e-10 output|out_format: 6 adv_opts|adv_opts_selector: basic |
name: value |
rhodopsin_nucs.fasta four_human_proteins.fasta value |
| Test-3 |
query: rhodopsin_nucs.fasta db_opts|database: db_opts|subject: four_human_proteins.fasta db_opts|db_opts_selector: file evalue_cutoff: 1e-10 output|out_format: ext adv_opts|adv_opts_selector: basic |
name: value |
rhodopsin_nucs.fasta four_human_proteins.fasta value |
| Test-4 |
query: rhodopsin_nucs.fasta db_opts|database: db_opts|subject: four_human_proteins.fasta db_opts|db_opts_selector: file evalue_cutoff: 1e-10 output|std_cols: ['qseqid', 'sseqid', 'pident', 'length', 'mismatch', 'gapopen', 'qstart', 'qend', 'sstart', 'send', 'evalue', 'bitscore'] output|ext_cols: ['sallseqid', 'score', 'nident', 'positive', 'gaps', 'ppos', 'qframe', 'sframe', 'qseq', 'sseq', 'qlen', 'slen', 'salltitles'] output|ids_cols: ['qgi', 'qacc', 'qaccver', 'sallseqid', 'sgi', 'sallgi', 'sacc', 'saccver', 'sallacc', 'stitle'] output|misc_cols: ['sstrand', 'frames', 'btop', 'qcovs', 'qcovhsp'] output|tax_cols: ['staxids', 'sscinames', 'scomnames', 'sblastnames', 'sskingdoms'] output|out_format: cols adv_opts|adv_opts_selector: basic |
name: value |
rhodopsin_nucs.fasta four_human_proteins.fasta value |
| Test-5 |
query: rhodopsin_nucs.fasta db_opts|database: db_opts|subject: four_human_proteins.fasta db_opts|db_opts_selector: file evalue_cutoff: 1e-10 output|out_format: 6 adv_opts|matrix_gapcosts|matrix: BLOSUM62 adv_opts|adv_opts_selector: advanced |
name: value |
rhodopsin_nucs.fasta four_human_proteins.fasta value |