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NCBI BLAST+ convert2blastmask tool metadata

Miscellaneous

Name: NCBI BLAST+ convert2blastmask

Description: Convert masking information in lower-case masked FASTA input to file formats suitable for makeblastdb

Id: ncbi_convert2blastmask_wrapper

Guid: toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/2.10.1+galaxy0

Version: 2.10.1+galaxy0

Version command string: convert2blastmask -version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/2.10.1+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/2.9.0+galaxy0

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/2.7.1+galaxy0

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.3.3

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.3.1

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.3.0

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.2.01

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.2.00

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.1.08

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.1.07

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.1.06

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.1.05

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.1.04

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.1.03

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.1.01

toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_convert2blastmask_wrapper/0.1.00

ncbi_convert2blastmask_wrapper

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

blast

2.10.1

package

Functional tests

name

inputs

outputs

required files

Test-1

infile: four_human_proteins_masked.fasta
masking_algorithm: seg
masking_options: window=12; locut=2.2; hicut=2.5
parse_seqids: True
outformat: maskinfo_asn1_bin

name: value

four_human_proteins_masked.fasta
value

Test-2

infile: four_human_proteins_masked.fasta
masking_algorithm: seg
masking_options: window=12; locut=2.2; hicut=2.5
parse_seqids: True
outformat: maskinfo_asn1_text

name: value

four_human_proteins_masked.fasta
value