| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_dustmasker_wrapper/2.10.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_dustmasker_wrapper/2.10.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_dustmasker_wrapper/2.9.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_dustmasker_wrapper/2.7.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_dustmasker_wrapper/0.3.3 |
| toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_dustmasker_wrapper/0.0.22 |
| ncbi_dustmasker_wrapper |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| blast | 2.10.1 | package |
| Additional information about this tool |
## The command is a Cheetah template which allows some Python based syntax.
## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
dustmasker
#if $db_opts.db_opts_selector == "db":
-in '${db_opts.database.fields.path}' -infmt blastdb
#elif $db_opts.db_opts_selector == "histdb":
-in '${os.path.join($db_opts.histdb.files_path, "blastdb")}' -infmt blastdb
#else:
-in '$subject' -infmt fasta
#end if
-out '$outfile'
-window $window -level $level -linker $linker -outfmt $outformat
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
db_opts|subject: three_human_mRNA.fasta db_opts|db_opts_selector: file window: 64 level: 20 linker: 1 outformat: fasta |
name: value |
three_human_mRNA.fasta value |
| Test-2 |
db_opts|subject: three_human_mRNA.fasta db_opts|db_opts_selector: file window: 64 level: 20 linker: 1 outformat: maskinfo_asn1_bin |
name: value |
three_human_mRNA.fasta value |
| Test-3 |
db_opts|subject: three_human_mRNA.fasta db_opts|db_opts_selector: file window: 64 level: 20 linker: 1 outformat: maskinfo_asn1_text |
name: value |
three_human_mRNA.fasta value |