## The command is a Cheetah template which allows some Python based syntax.
## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
segmasker
#if $db_opts.db_opts_selector == "db":
  -in '${db_opts.database.fields.path}' -infmt blastdb
#elif $db_opts.db_opts_selector == "histdb":
  -in '${os.path.join($db_opts.histdb.files_path, "blastdb")}' -infmt blastdb
#else:
  -in '$subject' -infmt fasta
#end if
-out '$outfile'
-window $window
-locut $locut
-hicut $hicut
-outfmt $outformat