Repository revision
21:7538e2bfcd41

Repository 'ncbi_blast_plus'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus

NCBI BLAST+ blastdbcmd entry(s) tool metadata
Miscellaneous
NCBI BLAST+ blastdbcmd entry(s)
Extract sequence(s) from BLAST database
ncbi_blastdbcmd_wrapper
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.2.00
0.2.00
blastdbcmd -version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.2.01
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.2.00 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.1.08
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.1.07
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.1.06
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.1.05
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.1.04
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.1.03
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.1.01
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.1.00
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.0.22
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.0.6
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.0.5
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/0.0.3
ncbi_blastdbcmd_wrapper
Requirements (dependencies defined in the <requirements> tag set)
name version type
blast 2.5.0 package
Functional tests
name inputs outputs required files
Test-1 id_opts|entries: all
db_opts|database: four_human_proteins
outfmt: original
id_opts|id_type: prompt
db_opts|db_type: prot
 attributes: name
 name
Test-2 id_opts|entries: all
db_opts|database: rhodopsin_nucs
outfmt: original
id_opts|id_type: prompt
db_opts|db_type: nucl
 attributes: name
 name
Test-3 id_opts|entries: U59921.1
db_opts|database: rhodopsin_nucs
outfmt: original
id_opts|id_type: prompt
db_opts|db_type: nucl
 attributes: name
 name
Test-4 id_opts|entries: gi|2734705|gb|U59921.1|BBU59921
db_opts|database: rhodopsin_nucs
outfmt: original
id_opts|id_type: prompt
db_opts|db_type: nucl
 attributes: name
 name