Repository revision
21:7538e2bfcd41

Repository 'ncbi_blast_plus'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus

NCBI BLAST+ blastp tool metadata
Miscellaneous
Search protein database with protein query sequence(s)
ncbi_blastp_wrapper
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.2.00
0.2.00
blastp -version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.2.01
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.2.00 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.08
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.07
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.06
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.05
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.04
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.03
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.01
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.00
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.22
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.20
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.19
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.17
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.15
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.14
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.13
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.12
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.11
ncbi_blastp_wrapper
Requirements (dependencies defined in the <requirements> tag set)
name version type
blast 2.5.0 package
Functional tests
name inputs outputs required files
Test-1 db_opts|db_opts_selector: file
evalue_cutoff: 1e-8
adv_opts|adv_opts_selector: advanced
db_opts|subject: rhodopsin_proteins.fasta
adv_opts|parse_deflines: True
adv_opts|filter_query: False
adv_opts|max_hits: 0
adv_opts|matrix: BLOSUM62
db_opts|database:
query: four_human_proteins.fasta
blast_type: blastp
adv_opts|qcov_hsp_perc: 25
adv_opts|word_size: 0
output|out_format: 5
attributes: name
four_human_proteins.fasta
rhodopsin_proteins.fasta
name
Test-2 db_opts|db_opts_selector: file
evalue_cutoff: 1e-8
adv_opts|adv_opts_selector: advanced
db_opts|subject: rhodopsin_proteins.fasta
adv_opts|parse_deflines: True
adv_opts|filter_query: False
adv_opts|max_hits: 0
adv_opts|matrix: BLOSUM62
db_opts|database:
query: four_human_proteins.fasta
blast_type: blastp
adv_opts|qcov_hsp_perc: 25
adv_opts|word_size: 0
output|out_format: 6
attributes: name
four_human_proteins.fasta
rhodopsin_proteins.fasta
name
Test-3 db_opts|db_opts_selector: file
evalue_cutoff: 1e-8
adv_opts|adv_opts_selector: advanced
db_opts|subject: rhodopsin_proteins.fasta
adv_opts|parse_deflines: True
adv_opts|filter_query: False
adv_opts|max_hits: 0
adv_opts|matrix: BLOSUM62
db_opts|database:
query: four_human_proteins.fasta
blast_type: blastp
adv_opts|qcov_hsp_perc: 25
adv_opts|word_size: 0
output|out_format: ext
attributes: name
four_human_proteins.fasta
rhodopsin_proteins.fasta
name
Test-4 db_opts|db_opts_selector: file
evalue_cutoff: 1e-8
adv_opts|adv_opts_selector: basic
db_opts|subject: four_human_proteins.fasta
db_opts|database:
blast_type: blastp
query: rhodopsin_proteins.fasta
output|out_format: 6
attributes: name
rhodopsin_proteins.fasta
four_human_proteins.fasta
name