Repository revision
21:7538e2bfcd41

Repository 'ncbi_blast_plus'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus

NCBI BLAST+ tblastn tool metadata
Miscellaneous
NCBI BLAST+ tblastn
Search translated nucleotide database with protein query sequence(s)
ncbi_tblastn_wrapper
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.2.00
0.2.00
tblastn -version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.2.01
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.2.00 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.08
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.07
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.06
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.05
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.04
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.03
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.01
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.1.00
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.0.22
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.0.20
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.0.19
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.0.17
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.0.15
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.0.14
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.0.13
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.0.12
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.0.11
ncbi_tblastn_wrapper
Requirements (dependencies defined in the <requirements> tag set)
name version type
blast 2.5.0 package
Functional tests
name inputs outputs required files
Test-1 db_opts|db_opts_selector: file
evalue_cutoff: 1e-10
adv_opts|adv_opts_selector: advanced
db_opts|subject: rhodopsin_nucs.fasta
adv_opts|parse_deflines: False
adv_opts|filter_query: False
adv_opts|max_hits: 0
adv_opts|matrix: BLOSUM80
db_opts|database:
query: four_human_proteins.fasta
adv_opts|word_size: 0
output|out_format: 5
 attributes: name
 four_human_proteins.fasta
rhodopsin_nucs.fasta
name
Test-2 db_opts|db_opts_selector: file
evalue_cutoff: 1e-10
adv_opts|adv_opts_selector: advanced
db_opts|subject: rhodopsin_nucs.fasta
adv_opts|parse_deflines: False
adv_opts|filter_query: False
adv_opts|max_hits: 0
adv_opts|matrix: BLOSUM80
db_opts|database:
query: four_human_proteins.fasta
adv_opts|word_size: 0
output|out_format: ext
 attributes: name
 four_human_proteins.fasta
rhodopsin_nucs.fasta
name
Test-3 db_opts|db_opts_selector: file
evalue_cutoff: 1e-10
adv_opts|adv_opts_selector: advanced
db_opts|subject: rhodopsin_nucs.fasta
adv_opts|parse_deflines: False
adv_opts|filter_query: False
adv_opts|max_hits: 0
adv_opts|matrix: BLOSUM80
db_opts|database:
query: four_human_proteins.fasta
adv_opts|word_size: 0
output|out_format: 6
 attributes: name
 four_human_proteins.fasta
rhodopsin_nucs.fasta
name
Test-4 db_opts|db_opts_selector: file
evalue_cutoff: 1e-10
adv_opts|adv_opts_selector: advanced
db_opts|subject: rhodopsin_nucs.fasta
adv_opts|parse_deflines: True
adv_opts|filter_query: False
adv_opts|max_hits: 0
adv_opts|matrix: BLOSUM80
db_opts|database:
query: four_human_proteins.fasta
adv_opts|word_size: 0
output|out_format: 6
 attributes: name
 four_human_proteins.fasta
rhodopsin_nucs.fasta
name
Test-5 db_opts|db_opts_selector: file
evalue_cutoff: 1e-10
adv_opts|adv_opts_selector: advanced
db_opts|subject: rhodopsin_nucs.fasta
adv_opts|parse_deflines: False
adv_opts|filter_query: False
adv_opts|max_hits: 0
adv_opts|matrix: BLOSUM80
db_opts|database:
query: four_human_proteins.fasta
adv_opts|word_size: 0
output|out_format: 0 -html
 attributes: name
 four_human_proteins.fasta
rhodopsin_nucs.fasta
name