Repository revision
35:cbf3f518b668

Repository 'ncbi_blast_plus'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus

NCBI BLAST+ blastp tool metadata
Miscellaneous
NCBI BLAST+ blastp
Search protein database with protein query sequence(s)
ncbi_blastp_wrapper
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.14.1+galaxy2
2.14.1+galaxy2
blastp -version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.14.1+galaxy2 (this tool)
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.14.1+galaxy1
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.14.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.10.1+galaxy2
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.10.1+galaxy1
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.10.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.9.0+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.7.1+galaxy0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.3.3
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.3.1
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.3.0
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.2.01
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.2.00
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.08
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.07
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.06
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.05
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.04
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.03
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.01
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.1.00
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.22
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.20
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.19
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.17
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.15
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.14
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.13
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.12
toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/0.0.11
ncbi_blastp_wrapper
Requirements (dependencies defined in the <requirements> tag set)
name version type
blast 2.14.1 package
Functional tests
name inputs outputs required files
Test-1 query: four_human_proteins.fasta
db_opts|database:
db_opts|subject: rhodopsin_proteins.fasta
db_opts|db_opts_selector: file
blast_type: blastp
evalue_cutoff: 1e-8
output|out_format: 5
adv_opts|filter_query: False
adv_opts|matrix_gapcosts|matrix: BLOSUM62
adv_opts|max_hits: 0
adv_opts|word_size:
adv_opts|window_size: 40
adv_opts|parse_deflines: True
adv_opts|qcov_hsp_perc: 25
adv_opts|adv_opts_selector: advanced
 name: value
 four_human_proteins.fasta
rhodopsin_proteins.fasta
value
Test-2 query: four_human_proteins.fasta
db_opts|database:
db_opts|subject: rhodopsin_proteins.fasta
db_opts|db_opts_selector: file
blast_type: blastp
evalue_cutoff: 1e-8
output|out_format: 6
adv_opts|filter_query: False
adv_opts|matrix_gapcosts|matrix: BLOSUM62
adv_opts|max_hits: 0
adv_opts|word_size:
adv_opts|window_size: 40
adv_opts|parse_deflines: True
adv_opts|qcov_hsp_perc: 25
adv_opts|adv_opts_selector: advanced
 name: value
 four_human_proteins.fasta
rhodopsin_proteins.fasta
value
Test-3 query: four_human_proteins.fasta
db_opts|database:
db_opts|subject: rhodopsin_proteins.fasta
db_opts|db_opts_selector: file
blast_type: blastp
evalue_cutoff: 1e-8
output|out_format: ext
adv_opts|filter_query: False
adv_opts|matrix_gapcosts|matrix: BLOSUM62
adv_opts|max_hits: 0
adv_opts|word_size:
adv_opts|parse_deflines: True
adv_opts|qcov_hsp_perc: 25
adv_opts|adv_opts_selector: advanced
 name: value
 four_human_proteins.fasta
rhodopsin_proteins.fasta
value
Test-4 query: rhodopsin_proteins.fasta
db_opts|database:
db_opts|subject: four_human_proteins.fasta
db_opts|db_opts_selector: file
blast_type: blastp
evalue_cutoff: 1e-8
output|out_format: 6
adv_opts|adv_opts_selector: basic
 name: value
 rhodopsin_proteins.fasta
four_human_proteins.fasta
value
Test-5 query: rhodopsin_peptides.fasta
db_opts|database:
db_opts|subject: four_human_proteins.fasta
db_opts|db_opts_selector: file
blast_type: blastp-short
evalue_cutoff: 200000
output|out_format: 6
adv_opts|adv_opts_selector: basic
 name: value
 rhodopsin_peptides.fasta
four_human_proteins.fasta
value
Test-6 query: rhodopsin_proteins.fasta
db_opts|database:
db_opts|subject: four_human_proteins.fasta
db_opts|db_opts_selector: file
blast_type: blastp
evalue_cutoff: 1e-8
output|out_format: 6
adv_opts|matrix_gapcosts|gap_costs: -gapopen 11 -gapextend 1
adv_opts|matrix_gapcosts|matrix: BLOSUM62
adv_opts|window_size: 35
adv_opts|comp_based_stats: 3
adv_opts|adv_opts_selector: advanced
 name: value
 rhodopsin_proteins.fasta
four_human_proteins.fasta
value