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hicPlotAverageRegions tool metadata

Miscellaneous

Name: hicPlotAverageRegions

Description: plot the average regions from hicAverageRegions

Id: hicexplorer_hicplotaverageregions

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.7.6+galaxy1

Version: 3.7.6+galaxy1

Version command string: hicPlotAverageRegions --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.7.6+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.7.5+galaxy1

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.7.5+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.7.2+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.6+galaxy1

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.6+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.4.3.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.3.1.0

hicexplorer_hicplotaverageregions

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.7.6

package

Additional information about this tool

Command:

hicPlotAverageRegions
            --matrix '$matrix'
            #if $colormap:
                --colorMap $colormap
            #end if

            #if $vMin:
                --vMin $vMin
            #end if

            #if $vMax:
                --vMax $vMax
            #end if

            #if $dpi:
                --dpi $dpi
            #end if

            $log1p $log
            --outputFile plot.$image_file_format

        && mv plot.$image_file_format plot

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

matrix: hicAverageRegions/result_range_100000.npz
colormap: RdYlBu_r
dpi: 10

name: value

hicAverageRegions/result_range_100000.npz
value

Test-2

matrix: hicAverageRegions/result_range_100000.npz
log: True
colormap: RdYlBu_r
dpi: 10

name: value

hicAverageRegions/result_range_100000.npz
value

Test-3

matrix: hicAverageRegions/result_range_100000.npz
log1p: True
colormap: RdYlBu_r
dpi: 10

name: value

hicAverageRegions/result_range_100000.npz
value

Test-4

matrix: hicAverageRegions/result_range_100000.npz
colormap: plasma
vMin: 10
vMax: 20
dpi: 10

name: value

hicAverageRegions/result_range_100000.npz
value