Repository revision
0:59ebf2c42c0e

Repository 'volcanoplot'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot

Volcano Plot tool metadata
Miscellaneous
Volcano Plot
create a volcano plot
volcanoplot
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.1
0.0.1
echo $(R --version | grep version | grep -v GNU)", ggplot2 version" $(R --vanilla --slave -e "library(ggplot2); cat(sessionInfo()\$otherPkgs\$ggplot2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", ggrepel version" $(R --vanilla --slave -e "library(ggrepel); cat(sessionInfo()\$otherPkgs\$ggrepel\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", dplyr version" $(R --vanilla --slave -e "library(dplyr); cat(sessionInfo()\$otherPkgs\$dplyr\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.2
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.1 (this tool)
volcanoplot
Requirements (dependencies defined in the <requirements> tag set)
name version type
r-ggplot2 3.0.0 package
r-ggrepel 0.8.0 package
r-dplyr 0.7.6 package
r-getopt 1.20.2 package
Functional tests
name inputs outputs required files
Test-1 fdr_col: 4
label_col: 1
lfc_col: 2
lfc_thresh: 0
pval_col: 3
input: input.tab
attributes: name
input.tab
name
Test-2 fdr_col: 4
label_col: 1
lfc_col: 2
labels|label_select: file
lfc_thresh: 0
pval_col: 3
input: input.tab
labels|label_file: labels.tab
attributes: name
input.tab
labels.tab
name