Revision: 0:59ebf2c42c0e

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot

Miscellaneous

Name: Volcano Plot

Description: create a volcano plot

Id: volcanoplot

Guid: toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.1

Version: 0.0.1

Version command string: echo $(R --version | grep version | grep -v GNU)", ggplot2 version" $(R --vanilla --slave -e "library(ggplot2); cat(sessionInfo()\$otherPkgs\$ggplot2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", ggrepel version" $(R --vanilla --slave -e "library(ggrepel); cat(sessionInfo()\$otherPkgs\$ggrepel\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", dplyr version" $(R --vanilla --slave -e "library(dplyr); cat(sessionInfo()\$otherPkgs\$dplyr\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.2

toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.1 (this tool)

volcanoplot

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
r-ggplot2	3.0.0	package
r-ggrepel	0.8.0	package
r-dplyr	0.7.6	package
r-getopt	1.20.2	package

Functional tests

name	inputs	outputs	required files
Test-1	fdr_col: 4 label_col: 1 lfc_col: 2 lfc_thresh: 0 pval_col: 3 input: input.tab	attributes: name	input.tab name
Test-2	fdr_col: 4 label_col: 1 lfc_col: 2 labels|label_select: file lfc_thresh: 0 pval_col: 3 input: input.tab labels|label_file: labels.tab	attributes: name	input.tab labels.tab name