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Volcano Plot tool metadata

Miscellaneous

Name: Volcano Plot

Description: create a volcano plot

Id: volcanoplot

Guid: toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.3

Version: 0.0.3

Version command string: echo $(R --version | grep version | grep -v GNU)", ggplot2 version" $(R --vanilla --slave -e "library(ggplot2); cat(sessionInfo()\$otherPkgs\$ggplot2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", ggrepel version" $(R --vanilla --slave -e "library(ggrepel); cat(sessionInfo()\$otherPkgs\$ggrepel\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", dplyr version" $(R --vanilla --slave -e "library(dplyr); cat(sessionInfo()\$otherPkgs\$dplyr\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.4

toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.3 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.2

toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.1

volcanoplot

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

r-ggplot2

3.1.0

package

r-ggrepel

0.8.0

package

r-dplyr

0.7.8

package

r-getopt

1.20.2

package

Functional tests

name

inputs

outputs

required files

Test-1

fdr_col: 4
label_col: 1
lfc_col: 2
lfc_thresh: 0
pval_col: 3
input: input.tab

attributes: name

input.tab
name

Test-2

fdr_col: 4
label_col: 1
lfc_col: 2
labels|label_select: file
lfc_thresh: 0
pval_col: 3
input: input.tab
labels|label_file: labels.tab

attributes: name

input.tab
labels.tab
name