Repository revision
6:83c573f2e73c

Repository 'volcanoplot'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot

Volcano Plot tool metadata
Miscellaneous
Volcano Plot
create a volcano plot
volcanoplot
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.5
0.0.5
echo $(R --version | grep version | grep -v GNU)", ggplot2 version" $(R --vanilla --slave -e "library(ggplot2); cat(sessionInfo()\$otherPkgs\$ggplot2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", ggrepel version" $(R --vanilla --slave -e "library(ggrepel); cat(sessionInfo()\$otherPkgs\$ggrepel\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", dplyr version" $(R --vanilla --slave -e "library(dplyr); cat(sessionInfo()\$otherPkgs\$dplyr\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.5 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.4
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.3
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.2
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.1
volcanoplot
Requirements (dependencies defined in the <requirements> tag set)
name version type
r-ggplot2 3.3.3 package
r-ggrepel 0.9.1 package
r-dplyr 1.0.6 package
Additional information about this tool
#if $out_options.rscript_out:
        cp '${volcanoplot_script}' rscript.txt &&
    #end if
    Rscript '${volcanoplot_script}'
None
False
Functional tests
name inputs outputs required files
Test-1 input: input.tab
fdr_col: 4
pval_col: 3
lfc_col: 2
label_col: 1
lfc_thresh: 0
name: value
input.tab
value
Test-2 input: input.tab
fdr_col: 4
pval_col: 3
lfc_col: 2
label_col: 1
lfc_thresh: 0
labels|label_file: labels.tab
labels|label_select: file
name: value
input.tab
labels.tab
value
Test-3 input: input.tab
header: yes
fdr_col: 4
pval_col: 3
lfc_col: 2
label_col: 1
lfc_thresh: 0
labels|label_file: labels.tab
labels|label_select: file
out_options|rscript_out: True
name: value
name: value
input.tab
labels.tab
value