Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.5 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.4 |
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.3 |
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.2 |
toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.1 |
volcanoplot |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
r-ggplot2 | 3.3.3 | package |
r-ggrepel | 0.9.1 | package |
r-dplyr | 1.0.6 | package |
Additional information about this tool |
#if $out_options.rscript_out: cp '${volcanoplot_script}' rscript.txt && #end if Rscript '${volcanoplot_script}'
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input: input.tab fdr_col: 4 pval_col: 3 lfc_col: 2 label_col: 1 lfc_thresh: 0 |
name: value |
input.tab value |
Test-2 |
input: input.tab fdr_col: 4 pval_col: 3 lfc_col: 2 label_col: 1 lfc_thresh: 0 labels|label_file: labels.tab labels|label_select: file |
name: value |
input.tab labels.tab value |
Test-3 |
input: input.tab header: yes fdr_col: 4 pval_col: 3 lfc_col: 2 label_col: 1 lfc_thresh: 0 labels|label_file: labels.tab labels|label_select: file out_options|rscript_out: True |
name: value name: value |
input.tab labels.tab value |