| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/lighter/lighter/1.0 (this tool) |
| lighter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| lighter | 1.1.1 | package |
| Additional information about this tool |
lighter
#for $file in $r:
-r $file
#end for
#if str($kmer.k_select) == "smallk":
-k $kmer.k_parameter_string
#elif str($kmer.k_select) == "bigK":
-K $kmer.K_parameter_string
#end if
-od ./
-t \${GALAXY_SLOTS:-4}
#if $maxcor:
-maxcor $maxcor
#end if
$trim
$discard
$noQual
#if $newQual:
-newQual '$newQual'
#end if
$stable
> $outfile
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
r: bwa-mem-fastq1.fq kmer|k_select: smallk noQual: True newQual: 12 12 0.1 stable: False |
name: value |
bwa-mem-fastq1.fq value |
| Test-2 |
r: bwa-mem-fastq1.fq kmer|k_select: bigK noQual: False newQual: 20 14 stable: True |
name: value |
bwa-mem-fastq1.fq value |