Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.4+galaxy0 (this tool) |
stacks2_cstacks |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
stacks | 2.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
popmap: denovo_map/popmap_cstacks.tsv input_stacks: list collection add_log: True |
attributes: name |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv denovo_map/popmap_cstacks.tsv name |
Test-2 |
input_stacks: list collection add_log: True |
attributes: name |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv name |
Test-3 |
report_mmatches: True input_stacks: list collection add_log: True k_len: 23 n: 2 |
attributes: name |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv name |