Repository revision
33:e918f33f7d4f

Repository 'sklearn_feature_selection'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection

Feature Selection tool metadata
Miscellaneous
module, including univariate filter selection methods and recursive feature elimination algorithm
sklearn_feature_selection
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.8.3
1.0.8.3
echo "1.0.8.3"
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.8.4
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.8.3 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.8.2
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.8.1
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.7.12
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.7.10
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.0.4.1
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/1.0.1
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/0.9.1
toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_feature_selection/sklearn_feature_selection/0.9
sklearn_feature_selection
Requirements (dependencies defined in the <requirements> tag set)
name version type
Galaxy-ML 0.8.3 package
Functional tests
name inputs outputs required files
Test-1 fs_algorithm_selector|model_inputter|estimator_selector|selected_estimator: RandomForestRegressor
fs_algorithm_selector|model_inputter|estimator_selector|text_params: n_estimators=10, random_state=10
fs_algorithm_selector|model_inputter|estimator_selector|selected_module: ensemble
fs_algorithm_selector|model_inputter|input_mode: new
fs_algorithm_selector|selected_algorithm: SelectFromModel
input_options|infile1: regression_train.tabular
input_options|header1: False
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5']
input_options|infile2: regression_train.tabular
input_options|header2: False
input_options|column_selector_options_2|col2: 6
name: value
regression_train.tabular
value
Test-2 fs_algorithm_selector|options|param: 20
fs_algorithm_selector|selected_algorithm: GenericUnivariateSelect
input_options|infile1: regression_X.tabular
input_options|header1: True
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17']
input_options|infile2: regression_y.tabular
input_options|header2: True
input_options|column_selector_options_2|col2: 1
name: value
regression_X.tabular
regression_y.tabular
value
Test-3 fs_algorithm_selector|selected_algorithm: SelectPercentile
input_options|infile1: regression_X.tabular
input_options|header1: True
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17']
input_options|infile2: regression_y.tabular
input_options|header2: True
input_options|column_selector_options_2|col2: 1
name: value
regression_X.tabular
regression_y.tabular
value
Test-4 fs_algorithm_selector|selected_algorithm: SelectKBest
input_options|infile1: regression_X.tabular
input_options|header1: True
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17']
input_options|infile2: regression_y.tabular
input_options|header2: True
input_options|column_selector_options_2|col2: 1
name: value
regression_X.tabular
regression_y.tabular
value
Test-5 fs_algorithm_selector|options|alpha: 0.05
fs_algorithm_selector|selected_algorithm: SelectFpr
input_options|infile1: regression_X.tabular
input_options|header1: True
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17']
input_options|infile2: regression_y.tabular
input_options|header2: True
input_options|column_selector_options_2|col2: 1
name: value
regression_X.tabular
regression_y.tabular
value
Test-6 fs_algorithm_selector|options|alpha: 0.05
fs_algorithm_selector|selected_algorithm: SelectFdr
input_options|infile1: regression_X.tabular
input_options|header1: True
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17']
input_options|infile2: regression_y.tabular
input_options|header2: True
input_options|column_selector_options_2|col2: 1
name: value
regression_X.tabular
regression_y.tabular
value
Test-7 fs_algorithm_selector|options|alpha: 0.05
fs_algorithm_selector|selected_algorithm: SelectFwe
input_options|infile1: regression_X.tabular
input_options|header1: True
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17']
input_options|infile2: regression_y.tabular
input_options|header2: True
input_options|column_selector_options_2|col2: 1
name: value
regression_X.tabular
regression_y.tabular
value
Test-8 fs_algorithm_selector|estimator_selector|selected_estimator: RandomForestRegressor
fs_algorithm_selector|estimator_selector|text_params: n_estimators=10, random_state=10
fs_algorithm_selector|estimator_selector|selected_module: ensemble
fs_algorithm_selector|selected_algorithm: RFE
input_options|infile1: regression_train.tabular
input_options|header1: False
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5']
input_options|infile2: regression_train.tabular
input_options|header2: False
input_options|column_selector_options_2|col2: 6
name: value
regression_train.tabular
value
Test-9 fs_algorithm_selector|estimator_selector|selected_estimator: RandomForestRegressor
fs_algorithm_selector|estimator_selector|text_params: n_estimators=10, random_state=10
fs_algorithm_selector|estimator_selector|selected_module: ensemble
fs_algorithm_selector|selected_algorithm: RFECV
input_options|infile1: regression_train.tabular
input_options|header1: False
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5']
input_options|infile2: regression_train.tabular
input_options|header2: False
input_options|column_selector_options_2|col2: 6
name: value
regression_train.tabular
value
Test-10 fs_algorithm_selector|options|threshold: 0.1
fs_algorithm_selector|selected_algorithm: VarianceThreshold
input_options|infile1: regression_X.tabular
input_options|header1: True
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17']
input_options|infile2: regression_y.tabular
input_options|header2: True
input_options|column_selector_options_2|col2: 1
name: value
regression_X.tabular
regression_y.tabular
value
Test-11 fs_algorithm_selector|options|k: 3
fs_algorithm_selector|selected_algorithm: SelectKBest
input_options|infile1: test3.tabular
input_options|header1: True
input_options|column_selector_options_1|col1: target
input_options|column_selector_options_1|selected_column_selector_option: all_but_by_header_name
input_options|infile2: test3.tabular
input_options|header2: True
input_options|column_selector_options_2|col2: target
input_options|column_selector_options_2|selected_column_selector_option2: by_header_name
name: value
test3.tabular
value
Test-12 fs_algorithm_selector|model_inputter|fitted_estimator: rfr_model01
fs_algorithm_selector|model_inputter|input_mode: prefitted
fs_algorithm_selector|selected_algorithm: SelectFromModel
input_options|infile1: regression_train.tabular
input_options|header1: False
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5']
input_options|infile2: regression_train.tabular
input_options|header2: False
input_options|column_selector_options_2|col2: 1
name: value
rfr_model01
regression_train.tabular
value
Test-13 fs_algorithm_selector|estimator_selector|selected_estimator: RandomForestRegressor
fs_algorithm_selector|estimator_selector|text_params: n_estimators=10, random_state=10
fs_algorithm_selector|estimator_selector|selected_module: ensemble
fs_algorithm_selector|options|cv_selector|random_state: 0
fs_algorithm_selector|options|cv_selector|groups_selector|header_g: True
fs_algorithm_selector|options|cv_selector|selected_cv: GroupShuffleSplit
fs_algorithm_selector|selected_algorithm: RFECV
input_options|infile1: regression_X.tabular
input_options|header1: True
input_options|column_selector_options_1|col1: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17']
input_options|infile2: regression_y.tabular
input_options|header2: True
input_options|column_selector_options_2|col2: 1
name: value
regression_X.tabular
regression_y.tabular
value