| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filemerger/FileMerger/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filemerger/FileMerger/2.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filemerger/FileMerger/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filemerger/FileMerger/2.1.0 |
| FileMerger |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.5 | package |
| openms-thirdparty | 2.5 | package |
| blast | 2.9.0 | package |
| openjdk | 8.0.192 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: ['FileMerger_2_input1.dta', 'FileMerger_2_input2.dta'] out_type: mzML annotate_file_origin: False append_method: append_rows rt_concat|gap: 0.0 raw|rt_auto: False raw|rt_custom: 5.0 10.0 raw|rt_filename: False raw|ms_level: 0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileMerger_2_input1.dta FileMerger_2_input2.dta value |
| Test-2 |
in: ['FileMerger_3_input1.dta', 'FileMerger_3_input2.dta'] out_type: mzML annotate_file_origin: False append_method: append_rows rt_concat|gap: 0.0 raw|rt_auto: True raw|rt_custom: raw|rt_filename: False raw|ms_level: 0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileMerger_3_input1.dta FileMerger_3_input2.dta value |
| Test-3 |
in: ['FileMerger_4_input1.dta2d', 'FileMerger_4_input2.dta2d'] out_type: mzML annotate_file_origin: False append_method: append_rows rt_concat|gap: 0.0 raw|rt_auto: False raw|rt_custom: raw|rt_filename: False raw|ms_level: 0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileMerger_4_input1.dta2d FileMerger_4_input2.dta2d value |
| Test-4 |
in: ['FileMerger_5_input_rt1023.331.dta', 'FileMerger_5_input_rt2044.334.dta', 'FileMerger_5_input_rt889.32.dta'] out_type: mzML annotate_file_origin: False append_method: append_rows rt_concat|gap: 0.0 raw|rt_auto: False raw|rt_custom: raw|rt_filename: True raw|ms_level: 2 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileMerger_5_input_rt1023.331.dta FileMerger_5_input_rt2044.334.dta FileMerger_5_input_rt889.32.dta value |
| Test-5 |
in: ['FileMerger_6_input1.mzML', 'FileMerger_6_input2.mzML'] out_type: mzML annotate_file_origin: False append_method: append_rows rt_concat|gap: 0.0 raw|rt_auto: False raw|rt_custom: raw|rt_filename: False raw|ms_level: 0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileMerger_6_input1.mzML FileMerger_6_input2.mzML value |
| Test-6 |
in: ['FileMerger_7_input1.featureXML', 'FileMerger_7_input2.featureXML'] out_type: featureXML annotate_file_origin: False append_method: append_rows rt_concat|gap: 0.0 raw|rt_auto: False raw|rt_custom: raw|rt_filename: False raw|ms_level: 0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileMerger_7_input1.featureXML FileMerger_7_input2.featureXML value |
| Test-7 |
in: ['FileMerger_8_input1.consensusXML', 'FileMerger_8_input2.consensusXML'] out_type: consensusXML annotate_file_origin: False append_method: append_rows rt_concat|gap: 0.0 raw|rt_auto: False raw|rt_custom: raw|rt_filename: False raw|ms_level: 0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileMerger_8_input1.consensusXML FileMerger_8_input2.consensusXML value |
| Test-8 |
in: ['FileMerger_9_input1.traML', 'FileMerger_9_input2.traML'] out_type: traML annotate_file_origin: False append_method: append_rows rt_concat|gap: 0.0 raw|rt_auto: False raw|rt_custom: raw|rt_filename: False raw|ms_level: 0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileMerger_9_input1.traML FileMerger_9_input2.traML value |
| Test-9 |
in: ['FileMerger_6_input2.mzML', 'FileMerger_6_input2_2.mzML'] out_type: mzML annotate_file_origin: False append_method: append_rows rt_concat|gap: 10.0 raw|rt_auto: False raw|rt_custom: raw|rt_filename: False raw|ms_level: 0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'trafo_out_FLAG'] |
name: value name: value |
FileMerger_6_input2.mzML FileMerger_6_input2_2.mzML value |
| Test-10 |
in: ['FileMerger_8_input1.consensusXML', 'FileMerger_8_input2.consensusXML'] out_type: consensusXML annotate_file_origin: False append_method: append_cols rt_concat|gap: 0.0 raw|rt_auto: False raw|rt_custom: raw|rt_filename: False raw|ms_level: 0 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileMerger_8_input1.consensusXML FileMerger_8_input2.consensusXML value |