Repository revision
0:39006f6fd6bf

Repository 'cp_overlay_outlines'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/cp_overlay_outlines

OverlayOutlines tool metadata
Miscellaneous
places outlines of objects over a desired image.
cp_overlay_outlines
toolshed.g2.bx.psu.edu/repos/bgruening/cp_overlay_outlines/cp_overlay_outlines/3.1.9
3.1.9
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/cp_overlay_outlines/cp_overlay_outlines/3.1.9+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/cp_overlay_outlines/cp_overlay_outlines/3.1.9 (this tool)
cp_overlay_outlines
Requirements (dependencies defined in the <requirements> tag set)
name version type
python 3.7 package
Functional tests
name inputs outputs required files
Test-1 input_pipeline: common.cppipe
con_blank_img|image_to_outline: OrigGray
con_blank_img|con_display_mode|rpt_obj_to_display_0|obj_to_display: Embryos
con_blank_img|con_display_mode|rpt_obj_to_display_0|outline_color: #FF0000
con_blank_img|con_display_mode|display_mode: Color
con_blank_img|blank_img: No
name_output_image: OutlineImage
howto_outline: Inner
name: value
common.cppipe
value
Test-2 input_pipeline: common.cppipe
con_blank_img|con_display_mode|rpt_obj_to_display_0|obj_to_display: DNA
con_blank_img|con_display_mode|rpt_obj_to_display_1|obj_to_display: DNA1
con_blank_img|con_display_mode|display_mode: Grayscale
con_blank_img|blank_img: Yes
name_output_image: OutputImage
howto_outline: Outer
name: value
common.cppipe
value
Test-3 input_pipeline: common.cppipe
con_blank_img|con_display_mode|rpt_obj_to_display_0|obj_to_display: DNA1
con_blank_img|con_display_mode|rpt_obj_to_display_0|outline_color: #548dd4
con_blank_img|con_display_mode|rpt_obj_to_display_1|obj_to_display: DNA3
con_blank_img|con_display_mode|rpt_obj_to_display_1|outline_color: #000000
con_blank_img|con_display_mode|display_mode: Color
con_blank_img|blank_img: Yes
name_output_image: OutputImage
howto_outline: Inner
name: value
common.cppipe
value
Test-4 input_pipeline: common.cppipe
con_blank_img|image_to_outline: DNA1
con_blank_img|con_display_mode|method_brightness: Max possible
con_blank_img|con_display_mode|rpt_obj_to_display_0|obj_to_display: Object1
con_blank_img|con_display_mode|rpt_obj_to_display_1|obj_to_display: Object2
con_blank_img|con_display_mode|display_mode: Grayscale
con_blank_img|blank_img: No
name_output_image: OutputImage
howto_outline: Thick
name: value
common.cppipe
value