| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0rc1+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0rc1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0beta2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0beta2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0beta2 |
| mummer_mummerplot |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mummer4 | 4.0.0 | package |
| samtools | 1.21 | package |
| gnuplot | 5.4.10 | package |
| Additional information about this tool |
ln -s $reference_sequence reference.fa &&
ln -s $query_sequence query.fa &&
mummerplot
-b '$breaklen'
$color
$coverage
$filter
$fat
#if str($labels.IDs) == 'yes':
-IdR '$labels.ref_id'
-IdQ '$labels.query_id'
#end if
#if str($sequences.seq_input) == 'yes':
-R '$reference_sequence'
-Q '$query_sequence'
$sequences.layout
#end if
-s '$size'
-terminal png
-title '$title'
$snp
#if $range.custom == 'yes':
-x [$range.min_x:$range.max_x]
-y [$range.min_y:$range.max_y]
#end if
'$delta'
&& gnuplot < out.gp
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
delta: nucmer.txt reference_sequence: human_aqp3.fasta query_sequence: mouse_aqp3.fasta sequences|seq_input: no extra_outs: all |
name: value name: value name: value name: value name: value |
nucmer.txt human_aqp3.fasta mouse_aqp3.fasta value |